Thinking about bioinformatics, evolution, and immunogenomics. Writing in Python, R, Nextflow, Rust, and more.
Base-, Variant-, and Consensus-calling under One Proverbial Roof.
Take PacBio HiFi and Nanopore reads and perform de novo assembly on specific regions of the genome—or the whole thing!
Real-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States
Auto-generate type-validated, error-free input samplesheets for the nf-core pipeline you want to run. Pipeline support is limited at this stage, but more pipelines will be added in the future.
Analysis Pipeline for Minor and Ramuta et al. 2023: Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings
Halfmann and Minor et al. 2022 visualizations of a persistent SARS-CoV-2 infection that led to globally unique E484T mutation