Nick Minor
Thinking about bioinformatics, evolution, and immunogenomics. Writing in Python, R, Nextflow, Rust, and more.
Fun with AI
Contributions (2025)
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Pinned Repositories
oneroof
Base-, Variant-, and Consensus-calling under One Proverbial Roof.
nf-RASH
Take PacBio HiFi and Nanopore reads and perform de novo assembly on specific regions of the genome—or the whole thing!
dairy-hpai-monitoring
Real-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States
give-a-sheet
Auto-generate type-validated, error-free input samplesheets for the nf-core pipeline you want to run. Pipeline support is limited at this stage, but more pipelines will be added in the future.
air-metagenomics
Analysis Pipeline for Minor and Ramuta et al. 2023: Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings
E484T-visualizations
Halfmann and Minor et al. 2022 visualizations of a persistent SARS-CoV-2 infection that led to globally unique E484T mutation